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Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in FungiDichomitus squalens partially tailors its molecular responses to the composition of solid woodCultivation of Podospora anserina on soybean hulls results in an efficient enzyme cocktail for plant biomass hydrolysisIdentification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulatorCarbohydrate esterase family 16 contains fungal hemicellulose acetyl esterases (HAEs) with varying specificityThe Amylolytic Regulator AmyR of
Aspergillus niger Is Involved in Sucrose and Inulin Utilization in a Culture-Condition-Dependent Manner.Unraveling the regulation of sugar beet pulp utilization in the industrially relevant fungus Aspergillus nigerColonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variationIn Silico Analysis of Putative Sugar Transporter Genes in Aspergillus niger Using Phylogeny and Comparative TranscriptomicsBioinformatics Approaches for Fungal BiotechnologyNon-homologous end-joining-deficient filamentous fungal strains mitigate the impact of off-target mutations during the application of CRISPR/Cas9The transcriptomic response of two basidiomycete fungi to plant biomass is modulated by temperature to a different extentGenome Sequence of the Basidiomycete White-Rot Fungus Trametes pubescens FBCC735Community dynamics of Neocallimastigomycetes in the rumen of yak feeding on wheat straw revealed by different primer setsThe fungus Aspergillus niger consumes sugars in a sequential manner that is not mediated by the carbon catabolite repressor CreAGalR, GalX and AraR co-regulate d-galactose and l-arabinose utilization in Aspergillus nidulansThe Sugar Metabolic Model of
Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum.The transcriptional activator GaaR of Aspergillus niger is required for release and utilization of D-galacturonic acid from pectinMixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalensDetailed analysis of the D-galactose catabolic pathways in Aspergillus niger reveals complexity at both metabolic and regulatory levelGlucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalensThe secretome of
Agaricus bisporusHigh resolution visualization and exo-proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus nigerThe transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus nigerCreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent mannerTranscriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory networkMyceliophthora thermophila Xyr1 is predominantly involved in xylan degradation and xylose catabolismThe Cultivation Method Affects the Transcriptomic Response of Aspergillus niger to Growth on Sugar Beet PulpPenicillium subrubescens adapts its enzyme production to the composition of plant biomassThe presence of trace components significantly broadens the molecular response of Aspergillus niger to guar gumA systems-wide screen identifies substrates of the SCFβTrCP ubiquitin ligaseRevisiting a 'simple' fungal metabolic pathway reveals redundancy, complexity and diversityInduction of Genes Encoding Plant Cell Wall-Degrading Carbohydrate-Active Enzymes by Lignocellulose-Derived Monosaccharides and Cellobiose in the White-Rot Fungus Dichomitus squalensGenome-wide prediction and transcriptome analysis of sugar transporters in four ascomycete fungiDatasets from an interaction proteomics screen for substrates of the SCF(βTrCP) ubiquitin ligaseGenomic and exoproteomic diversity in plant biomass degradation approaches among AspergilliDiscovery of Novel p-Hydroxybenzoate-m-hydroxylase, Protocatechuate 3,4 Ring-Cleavage Dioxygenase, and Hydroxyquinol 1,2 Ring-Cleavage Dioxygenase from the Filamentous Fungus Aspergillus nigerDraft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifugaCombinatorial control of gene expression in Aspergillus niger grown on sugar beet pectinComparative analysis of basidiomycete transcriptomes reveals a core set of expressed genes encoding plant biomass degrading enzymes