Integrated genome-wide analysis of transcription factor occupancy, RNA polymerase II binding and steady-state RNA levels identify differentially regulated functional gene classesGenetic basis of transcriptome differences between the founder strains of the rat HXB/BXH recombinant inbred panelPrimary colorectal cancers and their subsequent hepatic metastases are genetically different: implications for selection of patients for targeted treatmentMultiplexed array-based and in-solution genomic enrichment for flexible and cost-effective targeted next-generation sequencingCombined sequence-based and genetic mapping analysis of complex traits in outbred ratsImproving mammalian genome scaffolding using large insert mate-pair next-generation sequencing